Plant Science

Play with spatial tools on 3D cells images

Let’s play with mapping tools on non-maps data ! {rayshader} is nice on raster maps, but what about using it on segmentized plant cell? […] I wanted to find a good reason to play with Tyler Morgan-Wall packages for 3D visualisation of raster data: {rayshader} and {rayfocus}. Using cell …

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Rshiny expert image comparison app

I participated to a scientific publication on the analysis of plant cell images with a bio-image analyst Marion Louveaux. Part of the analysis was to define observation for each cell by visual expertise. The problem is that being able to observe the entire tissue when supposed to give an expertise …

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